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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGACACTAGGGTCCATGCTGCTAATAAGCTAGCCAATAAGCATGTCCGCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacattacggttttcgtatttcaccaaaaaaaaattaaaattaaattaaaaataagatcgacattgtgagcacacgtactaggttccattaccgc...

Basic information

species Physcomitrella patens
transcript PP1S98_84V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162245599|gb|FC424127.1|FC424127
EST:     GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG                         GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST: gi|18330765|gb|BJ162771.1|BJ162771
EST:     GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG                         GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGA
EST: gi|18330923|gb|BJ162929.1|BJ162929
EST:     GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG                         GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST: gi|162233741|gb|FC410007.1|FC410007
EST:     GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG                         GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST: gi|208385375|gb|DC956615.1|DC956615
EST:     CGTGCCTCTTGTTNGACAGCTTGAGCCTTCCCCGCTGCGACATATGTCAG                         GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: CGTGCCTCTTGTTGGACAGCTTGAGCC-TCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST: gi|100416857|gb|BY993124.1|BY993124
EST:     GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG                         GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST: gi|208384366|gb|DC928117.1|DC928117
EST:     GCGTGCCTCTTGTTGGACAGCTTGAGCNTCCCCGNTGCGACATATGTCAG                         GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA