Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162245599|gb|FC424127.1|FC424127EST: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST:
gi|18330765|gb|BJ162771.1|BJ162771EST: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGA
EST:
gi|18330923|gb|BJ162929.1|BJ162929EST: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST:
gi|162233741|gb|FC410007.1|FC410007EST: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST:
gi|208385375|gb|DC956615.1|DC956615EST: CGTGCCTCTTGTTNGACAGCTTGAGCCTTCCCCGCTGCGACATATGTCAG GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: CGTGCCTCTTGTTGGACAGCTTGAGCC-TCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST:
gi|100416857|gb|BY993124.1|BY993124EST: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAG GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
EST:
gi|208384366|gb|DC928117.1|DC928117EST: GCGTGCCTCTTGTTGGACAGCTTGAGCNTCCCCGNTGCGACATATGTCAG GAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
genomic: GCGTGCCTCTTGTTGGACAGCTTGAGCCTCCCCGCTGCGACATATGTCAGgtccgtacat ... tgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatttgcttgatgtgttgctttaccataaacgcatcgttattggtgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGAGATTGTGATGTGTCCATTCACAGCGCCAACAAGCTGTCCTCCAACCACC
gcttgat putative branch site (score: 5)
tgtttttc putative PPT
tgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggtggtgattcttagggcgttaggctggatacaaggcctacacgaaatttgcttgatgtgttgctttaccataaacgcatcgttattggtgtttttcagGAAAAACCAGGTTTCTTTTTCTGCTTGGAAGACAGGGCTCTTCTCTGTCGAGATTGTGATGTGTCCATTCACAGCGCCAACAAGCTGTCCTCCAACCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG