1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCCAGCAGTGTTTCTGTCACTTGATCGAGCGAGATGTTCTTTGTTTGAAGCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcacttaatcttcgctggattagtattgctttttctgagcacgttctgtcatagctggatattaagcttttgctttaaccgcttggtttacattaa...
species | Physcomitrella patens |
transcript | PP1S98_66V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGAT GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGGEST: gi|18328974|gb|BJ160980.1|BJ160980
genomic: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
EST: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGAT GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGGEST: gi|18374531|gb|BJ206109.1|BJ206109
genomic: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
EST: CAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAAGAT GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGEST: gi|208359944|gb|DC938965.1|DC938965
genomic: CAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATG-AAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGG
EST: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGAT GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
genomic: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCAGCAGTGTTTCTGTCACTTGATCGAGCGAGATGTTCTTTGTTTGAAGCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcacttaatcttcgctggattagtattgctttttctgagcacgttctgtcatagctggatattaagcttttgctttaaccgcttggtttacattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA