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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcgtctacttgagatatttgttttcgtatgttagtgtcaagcaagggttagaacaaatcagacatgtgatctgattttgactttaaacggtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGGTCCATTGCTGTGTCACTGACGTTTTATATACTCCGTAAGAGCCGGCGCC

Basic information

species Physcomitrella patens
transcript PP1S98_66V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18364758|gb|BJ196831.1|BJ196831
EST:     GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGAT                         GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
genomic: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
EST: gi|18328974|gb|BJ160980.1|BJ160980
EST:     GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGAT                         GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
genomic: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
EST: gi|18374531|gb|BJ206109.1|BJ206109
EST:     CAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAAGAT                         GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGG
genomic: CAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATG-AAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGG
EST: gi|208359944|gb|DC938965.1|DC938965
EST:     GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGAT                         GTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG
genomic: GCAACATGTCTTCCAACTGTTCATGTTCGTGTAGTTCGTCGAATGAAGATgtaagcactt ... gtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggttagaacaaatcagacatgtgatctgattttgactttaaacggtgtgtgcagGTTTCTGGCGAAACAGCAACAGAGCGACCAATGCTCTTGCAGGGTATTGGGTCCATTGCTGTGTCACTGACGTTTTATATACTCCGTAAGAGCCGGCGCC
                              ttttgac  putative branch site (score: 3)
                             attttgactttaaa  TA-rich tract