1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTTACTTTAACGATGACCTTCTGTCAATCCGGACAGGTCTCGTTACTCTGCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCGgttagtctctctgacttccttttacggctttagacaacaccatgaagtcgtgttcgctatgcacttaactcgttggtttatacagctttatgaatattcc...
species | Physcomitrella patens |
transcript | PP1S98_43V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCG GATTGGTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTCEST: gi|100399605|gb|BY972802.1|BY972802
genomic: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCGgttagtctct ... taaattccagGATTGGTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTC
EST: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCG GATTGGTGAAAGATTT-GAAGAAACATGACAAGCGCACEST: gi|162188837|gb|FC364851.1|FC364851
genomic: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCGgttagtctct ... taaattccagGATTGGTGAA-GATTTTGAAGAAACATGACAAGCGCAC
EST: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCG GATTGGTGAAGATTTTGAAGAAACAEST: gi|162273562|gb|FC449291.1|FC449291
genomic: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCGgttagtctct ... taaattccagGATTGGTGAAGATTTTGAAGAAACA
EST: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCG GATTGNTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTCEST: gi|18338647|gb|BJ170671.1|BJ170671
genomic: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCGgttagtctct ... taaattccagGATTGGTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTC
EST: AGAGTTACAGCTCCCTAAACTACACCG GATTGGTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTCEST: gi|162190016|gb|FC366590.1|FC366590
genomic: AGAGTTACAGCTCCCTAAACTACACCGgttagtctct ... taaattccagGATTGGTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTC
EST: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCG GATTGGTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTC
genomic: GCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCGgttagtctct ... taaattccagGATTGGTGAAGATTTTGAAGAAACATGACAAGCGCACAGGAGCTGTGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTACTTTAACGATGACCTTCTGTCAATCCGGACAGGTCTCGTTACTCTGCATGGAGAACTCGTTCTTATGGAGAGTTACAGCTCCCTAAACTACACCGgttagtctctctgacttccttttacggctttagacaacaccatgaagtcgtgttcgctatgcacttaactcgttggtttatacagctttatgaatattcc
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC