1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATAGAAGAGGAGGATTTCTTGCGGCTCCTGAATGTTGAGCTCGAGAAGTTCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaaattatctttcaacctgagctgttttcatcctcacaataatgcgcagttgtatagatttagtcggcttagtgtgcacatggataacttttt...
species | Physcomitrella patens |
transcript | PP1S98_43V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAG GAGCTAAAGCAAAAGCTGGAGAGGEST: gi|100406429|gb|BY955622.1|BY955622
genomic: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaa ... tgcgatgcagGAGCTAAAGCAAAAGCTGGAGAGG
EST: TCA-CCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAG GAGCTAAAGCAAAAGCTGGAGAGGCTTTCGACAAAA-CATGGCGCAGGCGTEST: gi|208380183|gb|DC927462.1|DC927462
genomic: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaa ... tgcgatgcagGAGCTAAAGCAAAAGCTGGAGAGGCTT-CGACAAAAACATGGCGCAGGCGT
EST: TCANCCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAG GAGCTAAAGCAAAGGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTGEST: gi|100399605|gb|BY972802.1|BY972802
genomic: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaa ... tgcgatgcagGAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTG
EST: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAG GAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTGEST: gi|162188837|gb|FC364851.1|FC364851
genomic: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaa ... tgcgatgcagGAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTG
EST: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAG GAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTGEST: gi|162273562|gb|FC449291.1|FC449291
genomic: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaa ... tgcgatgcagGAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTG
EST: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAG GAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTGEST: gi|162190016|gb|FC366590.1|FC366590
genomic: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaa ... tgcgatgcagGAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTG
EST: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAG GAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTG
genomic: TCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaa ... tgcgatgcagGAGCTAAAGCAAAAGCTGGAGAGGCTTCGACAAAAACATGGCGCAGGCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGAAGAGGAGGATTTCTTGCGGCTCCTGAATGTTGAGCTCGAGAAGTTCAACCATTTCTTCACGGAACAGGAAGAAATCTATGTTATTCGCTTACAGgtacgcaaaaattatctttcaacctgagctgttttcatcctcacaataatgcgcagttgtatagatttagtcggcttagtgtgcacatggataacttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA