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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgacgattccttctgtgttggctacgaatgttggctatgaaaaaaccacagttacacttgcgaagagattcgctgtttcctgcctatcacaatactcaaagccttgtaaacggtaattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCTCTTGGCAACTCTACTGCGGATATGGAGCGATTTGTTACTGAGTTCTCGC

Basic information

species Physcomitrella patens
transcript PP1S98_36V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162269960|gb|FC445438.1|FC445438
EST:     TTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: TTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208363326|gb|DC935493.1|DC935493
EST:     CATCTGCACTTAANAAATATCATGGATGGAT-GCAANTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCNANCGATCCAA-TTTTACNAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|162269959|gb|FC445437.1|FC445437
EST:     TTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: TTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgctgtttcctgcctatcacaatactcaaagccttgtaaacggtaattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCTCTTGGCAACTCTACTGCGGATATGGAGCGATTTGTTACTGAGTTCTCGC
                                  ttgtaaa  TA-rich tract