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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggacgtgtggattacaatttatgttatgggtgatgcgattttcggtgtgatttaatgaagtgagatctgatattgggctggcttttctgtgccttttcagACAAGTTTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCG

Basic information

species Physcomitrella patens
transcript PP1S98_36V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100422425|gb|BY976367.1|BY976367
EST:     GCTCACGAAGCCTTTTCTTGACGTCTGTCGGAATGTGTTGCCTGTGATCG                         ACAAGTTTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACA
genomic: GCTCACGAAGCCTTTTCTTGACGTCTGTCGGAATGTGTTGCCTGTGATCGgtgtgttttc ... gccttttcagACAAGTTTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACA
EST: gi|208363326|gb|DC935493.1|DC935493
EST:     GCTCACGAAGCCTTTTCTTGACGTCTGTCGGAATGTGTTGCCTGTGATCG                         ACAAGTTTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACA
genomic: GCTCACGAAGCCTTTTCTTGACGTCTGTCGGAATGTGTTGCCTGTGATCGgtgtgttttc ... gccttttcagACAAGTTTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatttaatgaagtgagatctgatattgggctggcttttctgtgccttttcagACAAGTTTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCG
                   atctgat  putative branch site (score: 4)
                                    cttttctgtgcctttt  putative PPT
     tttaatgaa  TA-rich tract