Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCACCATGAAGATGAGAGTTAAATTGAATGAAATTCTTTCAAGAGTAGCAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaactcgcaaggctctccatatatattactatttctcggtcacgcaatactcagctcgacctggtcgaggcagttaatctcagtctcgcacctct...

Basic information

species Physcomitrella patens
transcript PP1S98_33V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6102498|gb|AW126968.1|AW126968
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162242044|gb|FC414451.1|FC414451
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162230336|gb|FC406900.1|FC406900
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162242004|gb|FC414450.1|FC414450
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162178132|gb|FC354850.1|FC354850
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162175935|gb|FC351613.1|FC351613
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|67573035|gb|BJ945859.1|BJ945859
EST:     AGGACTCCTACAGAGAATAAAATGAAG                         CCTGCCAGAATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTGA
genomic: AGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagCCTGCCAG-ATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTGA
EST: gi|162165746|gb|FC340901.1|FC340901
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162271068|gb|FC446095.1|FC446095
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162175934|gb|FC351612.1|FC351612
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162159888|gb|FC336141.1|FC336141
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|162156939|gb|FC333093.1|FC333093
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: gi|67696416|gb|BJ956649.1|BJ956649
EST:     GATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTGAC
genomic: GATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTGAC
EST: gi|162165747|gb|FC340902.1|FC340902
EST:     CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG                         CAGCCTGCCAGATCAAGCAAGGCTGAGGC
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... tgttcagcagC--C-TGCCAGATCAAGCAAGGCTGAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCACCATGAAGATGAGAGTTAAATTGAATGAAATTCTTTCAAGAGTAGCAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaactcgcaaggctctccatatatattactatttctcggtcacgcaatactcagctcgacctggtcgaggcagttaatctcagtctcgcacctct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG