Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGCCTTAATGGCAAAGGCGGGCTTATGTTTGCCTGCCACTGGTGTTCCACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcattttactgtcgccgattttgctgctgataaccatgtgttgcatttcaaaacatgacattacttctgaacatgagaggatgatcctaagcatagtcagtttgattgtgtggttctggttgcag

Basic information

species Physcomitrella patens
transcript PP1S98_33V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162180398|gb|FC355819.1|FC355819
EST:     CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG                         TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
EST: gi|162159889|gb|FC336142.1|FC336142
EST:     CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG                         TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
EST: gi|100409256|gb|BY991923.1|BY991923
EST:     CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG                         TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
EST: gi|162156940|gb|FC333094.1|FC333094
EST:     CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG                         TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT