1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGGCACCATGAAGATGAGAGTTAAATTGAATGAAATTCTTTCAAGAGTAGCAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaactcgcaaggctctccatatatattactatttctcggtcacgcaatactcagctcgacctggtcgaggcagttaatctcagtctcgcacctct...
species | Physcomitrella patens |
transcript | PP1S98_33V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162156939|gb|FC333093.1|FC333093
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162242044|gb|FC414451.1|FC414451
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|67573035|gb|BJ945859.1|BJ945859
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: AGGACTCCTACAGAGAATAAAATG-A- -AGCCTGCCAGAATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTEST: gi|67696416|gb|BJ956649.1|BJ956649
genomic: AGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAG-ATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTT
EST: GATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATG-A- -AGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162230336|gb|FC406900.1|FC406900
genomic: GATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162178131|gb|FC354849.1|FC354849
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGGTGAGGCAGAACCAGAGGAGATCAAGTTGEST: gi|6102498|gb|AW126968.1|AW126968
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162242004|gb|FC414450.1|FC414450
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162165746|gb|FC340901.1|FC340901
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162178132|gb|FC354850.1|FC354850
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162165747|gb|FC340902.1|FC340902
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCEST: gi|162271068|gb|FC446095.1|FC446095
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGC
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162175934|gb|FC351612.1|FC351612
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTTEST: gi|162175935|gb|FC351613.1|FC351613
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
EST: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAG CAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
genomic: CAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaact ... ccttgttcagCAGCCTGCCAGATCAAGCAAGGCTGAGGCAGAACCAGAGGAGATCAAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCACCATGAAGATGAGAGTTAAATTGAATGAAATTCTTTCAAGAGTAGCAAGATCGGCAAAAGGAGGTGCAAGGACTCCTACAGAGAATAAAATGAAGgttggtaactcgcaaggctctccatatatattactatttctcggtcacgcaatactcagctcgacctggtcgaggcagttaatctcagtctcgcacctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG