1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttggcattttactgtcgccgattttgctgctgataaccatgtgttgcatttcaaaacatgacattacttctgaacatgagaggatgatcctaagcatagtcagtttgattgtgtggttctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGTCAGATTCTAGAAGCTGGCACAGCTCAGTCATTGATACTGCTTGACGAGA
species | Physcomitrella patens |
transcript | PP1S98_33V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGTEST: gi|162159889|gb|FC336142.1|FC336142
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
EST: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGTEST: gi|100409256|gb|BY991923.1|BY991923
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
EST: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGTEST: gi|162156940|gb|FC333094.1|FC333094
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
EST: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAG TCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
genomic: CACGACTCCCCTGGTTTGACTCCATTCTTGCGGACATCGGGGATGATCAGgtttggcatt ... ctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGT
acatgagaggatgatcctaagcatagtcagtttgattgtgtggttctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGTCAGATTCTAGAAGCTGGCACAGCTCAGTCATTGATACTGCTTGACGAGA
gtttgat putative branch site (score: 11)
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggcattttactgtcgccgattttgctgctgataaccatgtgttgcatttcaaaacatgacattacttctgaacatgagaggatgatcctaagcatagtcagtttgattgtgtggttctggttgcagTCTTTAGAGCGCAACTTGTCAACCTTCAGTGGTCATATCCGAAGAGTCCGTCAGATTCTAGAAGCTGGCACAGCTCAGTCATTGATACTGCTTGACGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA