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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATGgtgagatatattgtacattctggctgggagaaagaggataaaatatgcagccgccaactttccataacgatgcaattttgcaactcgtcttatggcag

Basic information

species Physcomitrella patens
transcript PP1S98_26V6.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162151090|gb|FC326907.1|FC326907
EST:     AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATG                         GTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
genomic: AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATGgtgagatata ... cttatggcagGTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
EST: gi|208387186|gb|DC945485.1|DC945485
EST:     AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATG                         GTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
genomic: AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATGgtgagatata ... cttatggcagGTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
EST: gi|67692912|gb|BJ953145.1|BJ953145
EST:     AGCAGAAAAGATTAATG                         GTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
genomic: AGCAGAAAAGATTAATGgtgagatata ... cttatggcagGTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
EST: gi|208358626|gb|DC949961.1|DC949961
EST:     AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATG                         GTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
genomic: AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATGgtgagatata ... cttatggcagGTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
EST: gi|67698900|gb|BJ959133.1|BJ959133
EST:     AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATG                         GTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
genomic: AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATGgtgagatata ... cttatggcagGTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
EST: gi|208370667|gb|DC936155.1|DC936155
EST:     AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATG                         GTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT
genomic: AGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATGgtgagatata ... cttatggcagGTGACAAACATCCACGGGTAGGAATTATCTTGGCATGTCTTGCGGATGTGT