1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCTGATGCATCTCGCCACGTTTCCTGCGTCGGGAAGAAATGgtgcctacttaagccctcttgagaacaatctctgatttcttgtcattccatgggcgacctgaacctttgttgataatttctttgttggggctctgtctct...
species | Physcomitrella patens |
transcript | PP1S98_26V6.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTGATGCATCTCGCCACGTTTCCTGCGTCGGGAAGAAATG GGATTTGAGAGGAATTTAGGAGTGAACTGACATCTAGTCAGCGAAGGAGCAEST: gi|100441338|gb|BY962627.1|BY962627
genomic: TGCTGATGCATCTCGCCACGTTTCCTGCGTCGGGAAGAAATGgtgcctactt ... ctgtatgcagGGATTTGAGAGGAATTTAGGAGTGAACTGACATCTAGTCAGCGAAGGAGCA
EST: TGCTGATGCATCTCGCCACGTTTCCTGCGTCGGGAAGAAATG GGATTTGAGAGGAATTTAGGAGTGAACTGACATCTAGTCAGCGAAGGAGCA
genomic: TGCTGATGCATCTCGCCACGTTTCCTGCGTCGGGAAGAAATGgtgcctactt ... ctgtatgcagGGATTTGAGAGGAATTTAGGAGTGAACTGACATCTAGTCAGCGAAGGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGATGCATCTCGCCACGTTTCCTGCGTCGGGAAGAAATGgtgcctacttaagccctcttgagaacaatctctgatttcttgtcattccatgggcgacctgaacctttgttgataatttctttgttggggctctgtctct
GCTGAT
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - AAGAAA