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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtcaggtcttgttaaataaatgtttggtttcacattatatacttgtacacaaatttgacggttacaccatttcagtgacgttcgcttgtgtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATG

Basic information

species Physcomitrella patens
transcript PP1S98_26V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358626|gb|DC949961.1|DC949961
EST:     TTAGGCCAACTTGCCTGTCACGTGGG                         AGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
genomic: TTAGGCCAACTTGCCTGTCACGTGGGgtatgaattc ... gtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
EST: gi|67698900|gb|BJ959133.1|BJ959133
EST:     CTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGG                         AGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
genomic: CTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGGgtatgaattc ... gtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
EST: gi|208370667|gb|DC936155.1|DC936155
EST:     GTTCAGGTTGGAGCTCTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGG                         AGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA
genomic: GTTCAGGTTGGAGCTCTGGCAGGATTAGGCCAACTTGCCTGTCACGTGGGgtatgaattc ... gtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacacaaatttgacggttacaccatttcagtgacgttcgcttgtgtgcattcagAGATTTCGACGAAGCAGAGAGTAAAATCACTGAGGCACTTACTCAAGCAGAAAAGATTAATG
        atttgac  putative branch site (score: 4)
      aaatttga  TA-rich tract