1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAGCGATGGTATGCCAGGAACGACAGCGAGAAAGCAAAGCCCGACGCTGATTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATGgtaagcttccgcgccctaatagcttttcaattctcgtattatgtttctatatcaatgggtggataggttgagagaaaaatacatatttaatgcggattgcag
species | Physcomitrella patens |
transcript | PP1S98_26V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATG AATCAGCCCATGTGGAGGCTATCCGCGTGTTGGAACAGGGAAGAACTTTTCEST: gi|162151091|gb|FC326908.1|FC326908
genomic: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATGgtaagcttcc ... cggattgcagAATCAGCCCATGTGGAGGCTATCCGCGTGTTGGAACAGGGAAGAACTTTTC
EST: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATG AATCAGCCCATGTGGAGGCTATCCGCGTGTTGGAACAGGGAAGAACTTTTCEST: gi|100443196|gb|BY981822.1|BY981822
genomic: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATGgtaagcttcc ... cggattgcagAATCAGCCCATGTGGAGGCTATCCGCGTGTTGGAACAGGGAAGAACTTTTC
EST: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATG AATCAGCCCATGTGGGAG-CTATCCGCGTGGTGGAACAGGGAAGAACTTTTEST: gi|67575433|gb|BJ948257.1|BJ948257
genomic: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATGgtaagcttcc ... cggattgcagAATCAGCCCATGTGG-AGGCTATCCGCGTGTTGGAACAGGGAAGAACTTTT
EST: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATG AATCAGCCCATGTGGAGGCTATCCGCGTGTTGGAACAGGGAAGAACTTTTC
genomic: TTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATGgtaagcttcc ... cggattgcagAATCAGCCCATGTGGAGGCTATCCGCGTGTTGGAACAGGGAAGAACTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCGATGGTATGCCAGGAACGACAGCGAGAAAGCAAAGCCCGACGCTGATTCTATTGCAACGGAGATGATTAAGTATGCAGCCTCTTGTAGGAGTAATGgtaagcttccgcgccctaatagcttttcaattctcgtattatgtttctatatcaatgggtggataggttgagagaaaaatacatatttaatgcggattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG