1 5' 3' | 2 5' 3' | 3 5' 3' |
...acttttgtgttgaggtgggagtccgcaacatcacgcagccagtgtataattagctgcttggaaacaacagagtaattacaaactggttttcatgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAGCATTACACAAAGGACTTCGGCATGGAGTGCCGAATTGGGCGTTTCCACA
species | Physcomitrella patens |
transcript | PP1S98_250V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG CCCCAGGATGCCTACGGACTCGAGAAACTGGCCACANAGNAGTTGTGCAAGEST: gi|100409699|gb|BY956062.1|BY956062
genomic: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaa ... catgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAG
EST: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG CCCCAGGATGCCTACGGACTCEST: gi|100404739|gb|BY991259.1|BY991259
genomic: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaa ... catgtgacagCCCCAGGATGCCTACGGACTC
EST: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG CCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAGEST: gi|162193933|gb|FC371746.1|FC371746
genomic: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaa ... catgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAG
EST: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG CCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAGEST: gi|100394660|gb|BY989873.1|BY989873
genomic: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaa ... catgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAG
EST: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG CCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTTGTGCA-EST: gi|100363361|gb|BY966363.1|BY966363
genomic: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaa ... catgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTT-GTGCAA
EST: TGGAGACTGTTGTGAGCTCTTTGAAAGAATCGGATGCTTGGGCTGCTCTG CCCCAGGATGCCTACGGACTCGAGAAACTGGC-ACAGEST: gi|67719009|gb|BJ969268.1|BJ969268
genomic: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaa ... catgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAG
EST: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG CCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAG
genomic: TGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaa ... catgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAG
ataattagctgcttggaaacaacagagtaattacaaactggttttcatgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAGCATTACACAAAGGACTTCGGCATGGAGTGCCGAATTGGGCGTTTCCACA
ttttcat CT-rich tract
taattacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttttgtgttgaggtgggagtccgcaacatcacgcagccagtgtataattagctgcttggaaacaacagagtaattacaaactggttttcatgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAGCATTACACAAAGGACTTCGGCATGGAGTGCCGAATTGGGCGTTTCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA