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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg...

Basic information

species Physcomitrella patens
transcript PP1S98_250V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctg--------gatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg-
| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||||||| || || |||||||| ||     |||   |  | ||  |   || ||||      | |  || |   | ||| |        || ||| ||||    | |  ||  ||    | ||||  |||| | ||    
GTATGGGGTTCATTCAGTCCAACCACTCTGTGATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAGGCTGCACGTATCAATGGTGTGAAGAGgtc--cggctctctcttttttttttacatatttttactgttatatctcagcttagcctgagcttgttttatccatatcaattcatttgttacaactaatggtcctacag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os11g37890.3 (Oryza sativa), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg------
| ||||| |||||||| ||||| ||| | || |||||||||||||||||||||||||||||||||||||| ||||||||  | || ||||| |||        || |||  |||  |  |  |  || |||| |   || |     |     |   |   | ||    | |  |  |    | |  | || || | |         
GGATGGGATTCATTCAATCCAATCACTCTGTTATCATGTACAACAACACCATGATCAGCTTTAACATGCTTGAGGCCGCTAGGATTAATGGTGTC----AAAAGgtaacttttgaac--tggtgctggctctgtaaatcccatgttttatttttcaccaattgatgctataggatgctaagatctgttaaggtatataaagcctat

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttctttt-cgaaaaaaaaacacacagttaacaatgaatgtttc-tttg---
| ||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||  | || || ||||||        || ||       || |     | ||  ||||   | |  ||    || || | |  |   ||   |    || | |  |  |    | || |   | ||   
GGATGGGGTTCATCCAGTCCAACCACTCCGTCATCATGTACAACAACACCATGATCAGCTTTAACATGCTTGAGGCTGCTAGAATTAACGGCGTC----AAGAGgtaatttccagcc-tcaaggtagctgctctttgtttatcatgcgtgcatttaccctggtgagctagtttcatatatattgcctccagtgctaaatctgttc

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaaccc------ttgccccttctttttgcctctctccctctcgcagct--ctggatcttcttttcgaaaaaaaaacac-acagttaacaatgaatgtttctttg---------------------------
||||||| ||||| ||||| || ||| | ||||||||||||||||||||||||||||| ||||||||||| ||||| || || |||||||| ||     |||    |  |       ||||| |||| ||||   |||  |        | ||  |    |  |||    ||    |    ||   ||||  ||| |||  | |   ||                           
GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccc----cttctttttgcctctctccctctcgca-gctctggatcttctttt--cgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||||||||| |||||||||||| | || || |||||||||||||||||||| ||||| |||||| | ||||| ||  | |||||||| ||     |||     |   |   |       | || ||   || ||  |  | ||| | | | |   || | |   ||  | |   |  |    ||     |  || ||| || |
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccc----cttctttttgcctctctccctctcgcagctctggatcttcttttcgaa---aaaaaaacacacagttaacaatgaatgtttctttg-
| |||||||| || |||||||||||| | || || |||||||||||||||||||| ||||| |||||| | ||||| ||  | |||||||| ||     |||     |   |   |       | || ||   || ||  |  | |||        ||||  | |||     | |   |  |    ||     |  || ||| ||   
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccc----cttctttttgcctctctccctctcgcagctctggatcttcttttc---gaaaaaaaaacacacagttaacaatgaatgtttctttg--
| |||||||| || |||||||||||| | || || |||||||||||||||||||| ||||| |||||| | ||||| ||  | |||||||| ||     |||     |   |   |       | || ||   || ||  |  | |||        ||||  | ||   || | |   |  |    ||     |  || ||| |||   
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc---cttgccccttc---------tttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaa----cacacagttaacaatgaatgtttctttg-
| |||||||| |||||||| |||||| | || || |||||||||||||| ||||| ||||| |||||| | ||||| ||  | || || ||| |     |||| || | |   |    |  |||         ||||||   |   |  |   |  ||  ||| | || |  |   |  |  |        |    |    |  ||| ||| |    
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatcatgcacatcatttcaattatttgtttttggaccaaacatttatgatgcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA20G36740.3 (Glycine max), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaac---ccttgccccttct--------ttttgcctctctccctctcgcagctctggatcttctt------ttcgaaaaaaaaacacacagttaacaatgaatgtttctttg-
| |||||||| |||||||| |||||| | || || |||||||||||||| ||||| ||||| |||||| | ||||| ||  | || || ||| |     |||| |  |    || |  |  |||         |||||   ||   | | |         |  |||  ||      |  ||  |        |    |  |||  ||||||| |    
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagtgatggtccatatcatttcaattatatgttttgtgactaaacattttatgatgtggtgtctgttttgattatatgatgatgtgttttatgcattccaaaaaatgtttttccag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaa--caatgaatgtttctttg
| ||||| |||||||||||||| ||| | || |||||||| |||||||| ||||| ||||| |||||||| |||||  |  | |||||||| ||     |||| |    |||||      ||  ||   | |  |  | ||    || |  |  ||  ||| || ||  |   ||    | ||  ||| ||||  || ||||
GTATGGGCTTCATTCAGTCCAATCACTCTGTTATCATGTATAACAACACAATGATTAGCTTCAACATGCTTGAGGCTTCAAGAATCAATGGGGTTAAGAGgtttgtc-tccttggattcactacttatttttagctttatcagttctttccaagttgattt-gagaattatctactatttgaaaccaaagaatacttttttg

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv14s0030g02180.t01 (Vitis vinifera), 5'ss of exon 2
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaaccc-----ttgccccttctt---tttgcct---ctctccctctcgca---------gctctggatcttc------ttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg-----------------------------------------
| ||||| ||||| |||||||||||  | || || |||||||| ||||| ||||||||||| |||||||| |||||  |  | |||||||| ||     |||| |    |      |||  |  || |   |||| ||    ||||| | |   |         | |     |  ||      | |  |   |  | ||  | | |||  ||||||| |||||                                            
GAATGGGGTTCATCCAGTCCAACCATTCAGTTATTATGTACAATAACACAATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAATGGGGTTAAGAGgtttgttgtcttcaatttgttctatcctggctttgactaagttctccatttgatatgaaaattggtttcatgtactcagcatttatctgtctaggagacgtaaatttactaatgaatttttctggtcctgagaattctctaatatctgattattccacattgtgcag

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDP09235 (Chlamydomonas reinhardtii), 5'ss of exon 3
-----GCATGGGTTTCATTCA---GTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCT---------CTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaaca-cacagttaacaatgaatgtttctttg
     ||  ||| |     ||   || |||||  ||||    ||||  |  ||    | | |||   |  |||     ||    |  |  || |||    ||           |  || | ||   | |||  ||   |   ||  |     |    ||     |  | |  ||   ||      ||| ||   | |  |                  
GGTGTGCGAGGGCTGTGAGCACGTGTTCAACCTGGCCGCCGACATGGGCGGCATGGGCTTCATCCAGTCCAACCACTCCGTCATCATGTACAACAACACGgtgcgagccggggccggggttgcgggctttgggccggttacctggttacgggctgggcgggttaccaggttgtcccgtctgttggaaagcagtgcggcga------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ37016 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||||||||| ||||| || ||| | || ||| | | |||||| |||||||||||||| ||||||||||||||| | || |||||||| |||    |||  | |           ||||| ||   |  |      | | |||||    | ||| ||| |      |                              
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgtgtgga-----------ttcttcttttgttccgagaatttggagctc--acttttccttttggcttgcag-----------------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||| ||||| |||||||| ||| | |||||  | | |||||||||||||||||| || ||||||||||||||  | || |||||||| |||        || | ||  ||    ||||   |     | | | || |   | | |||| ||   | ||            ||                        
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTC----AAGAGgtagcctgtgatgtttctaagt-----tgttcttcccaaggatttggagctcactctctcgcttggcttccag-----------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||||||||| ||||| || ||| | || ||| | | |||||| |||||||||||||| ||||||||||||||| | || ||||||||         ||    |    | |   |||||||| |  |  |      | | |||||   || ||| ||| |      |                              
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGG--------AGTCAAAAGgtgtggattcttcttttgg--ttccgagaatttggagctc---attttccttttggcttgcag-----------------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||||||||| ||||| || ||| | || ||| | | |||||| |||||||||||||| ||||||||||||||| | || ||||||||         ||    |    | |   ||||||||||  |         | | |||||    | ||| ||| |      |                              
GGATGGGTTTCATCCAGTCGAATCACTCAGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGG--------AGTCAAAAGgtgtggattcttctttttg--ttctgagaatttggagctc--acttttccttttggcttgcag-----------------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ10353 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||| ||||| |||||||| ||| | |||||  | | |||||||||||||||||| || ||||||||||||||| | || |||||||| |||    ||| | |     | |   ||   || | | || |      | | |||||    |||   | | |      |                              
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtgat-gtttctaagttgttcttcccaaggatttggagctc--actctctctcttggcttccag-----------------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ18599 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||| ||||| |||||||| ||| | |||||  | | |||||||||||||||||| || ||||||||||||||| | || ||||| || |||    ||| | |     | |   ||   || | | || |      | | |||||    |||  || | |      |                              
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAACGGAGTCAAAAGgtagcctgtgat-gtttctaagttgttcttcccaaggatttggagctc--actctctttcttggcttccag-----------------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||| ||||| |||||||| ||| | |||||  | | |||||||||||||||||| || ||||||||||||||| | || |||||||| |||    ||| | |     | |   ||   || | | || |      | | |||||    |||  || | |      |                              
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggt-gtttctaagttgttcttcccaaggatttggagctc--actctctttcttggcttccag-----------------------------

upper sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 1
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg
| ||||||||||| ||||| || ||| | || ||| | | |||||| |||||||||||||| ||||||||||||||| | || ||||||||         ||    |    | |   ||||||||||  |  |      | | |||||    | ||| ||| |      |                              
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGG--------AGTCAAAAGgtgtggattcttctttttg--ttccgagaatttggagctc--acttttccttttggcttgcag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100439472|gb|BY961950.1|BY961950
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCCTCA-GCGCGTGTATTTACCCTGAGNTTCA-GCAGCTG
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCC-TCAAGCGCGTGTATTTACCCTGAG-TTCAAGCAGCTG
EST: gi|18349089|gb|BJ181138.1|BJ181138
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GGTTTTTCTATGCCTCA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagG-TTTTTCTATGCCTCA
EST: gi|100414897|gb|BY956916.1|BY956916
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
EST: gi|208376131|gb|DC914472.1|DC914472
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
EST: gi|100409699|gb|BY956062.1|BY956062
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCCTCA-GCGCGTGTATTTACCCTGAGTTCAAGCAGCTGG
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCC-TCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGG
EST: gi|100404739|gb|BY991259.1|BY991259
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
EST: gi|162193933|gb|FC371746.1|FC371746
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
EST: gi|100394660|gb|BY989873.1|BY989873
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
EST: gi|100356709|gb|BY965241.1|BY965241
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
EST: gi|100363361|gb|BY966363.1|BY966363
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTTCA-GCAGCTGG
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTT-CAAGCAGCTGG
EST: gi|67719009|gb|BJ969268.1|BJ969268
EST:     ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCG                         GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA
genomic: ATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 27 (downstream exon)
Score: 7

GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc ... aggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg

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