1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTAAAACATTGCTTGCCAAAACCTTGGCTAGATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACGAGTCTCACGCAGgtaactgatcagaacatgttgtttgaaggttttgctacgtcctaagtaaagctctacgcagaaaaaagtttagccgttctttttcccagacctgaggttg...
species | Physcomitrella patens |
transcript | PP1S98_222V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGTCATTGCTGACGCTACGAGTCTCACGCAG GCAGGATATGTAGGAGAGGATGTTGAATCTATACTTTACAAGCTCCTAGTGEST: gi|162174224|gb|FC350607.1|FC350607
genomic: CGTCATTGCTGACGCTACGAGTCTCACGCAGgtaactgatc ... ctctgttcagGCAGGATATGTAGGAGAGGATGTTGAATCTATACTTTACAAGCTCCTAGTG
EST: ATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACGAGTCTCACGNCAG -CAGGATATGTAGGAGAGGATGTTGAATCTATACTTTACAAGCTCCTAGEST: gi|162247501|gb|FC425067.1|FC425067
genomic: ATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACGAGTCTCACG-CAGgtaactgatc ... ctctgttcagGCAGGATATGTAGGAGAGGATGTTGAATCTATACTTTACAAGCTCCTAG
EST: GATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACGAGTCTCACGCAG GCAGGATATGTAGGAGAGGATGTTGAATCTATACTTTACAAGCTCCTAGTGEST: gi|162178158|gb|FC354876.1|FC354876
genomic: GATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACGAGTCTCACGCAGgtaactgatc ... ctctgttcagGCAGGATATGTAGGAGAGGATGTTGAATCTATACTTTACAAGCTCCTAGTG
EST: GATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACAAGTCTCACGCAG GCAGGGA-ATGTAAGAGAGGATGGTT-AATCTATACTTTACAAG
genomic: GATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACGAGTCTCACGCAGgtaactgatc ... ctctgttcagGCAGG-ATATGTAGGAGAGGATG-TTGAATCTATACTTTACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAAACATTGCTTGCCAAAACCTTGGCTAGATTTGTAAATGTACCTTTCGTCATTGCTGACGCTACGAGTCTCACGCAGgtaactgatcagaacatgttgtttgaaggttttgctacgtcctaagtaaagctctacgcagaaaaaagtttagccgttctttttcccagacctgaggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaaaa