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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttcgatgtctttttaaagttgatatttgagctcgtgcattttcccgcgtctagtcatgtgctcatttctaaagtaattgatgtaactcacctgcgttcatgcgccagGGCCGGGTAGTGGAGATCTTTGGTCAAGAAGCCTCTGGGAAGACGACGATTGCTCTTCACGTGATTGCACAGGCCCAAAAAATGGGAAAAG

Basic information

species Physcomitrella patens
transcript PP1S98_157V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162172329|gb|FC348270.1|FC348270
EST:     CTGGCTCTCTAAACCTCGACATTGCTCTAGGTGTTGGCGGTCTGCCAAAG                         GGCCGGGTAGTGGAGATCTTTGGTCAAGAAGCCTCTGGGAAGACGACGATT
genomic: CTGGCTCTCTAAACCTCGACATTGCTCTAGGTGTTGGCGGTCTGCCAAAGgtgagttctt ... catgcgccagGGCCGGGTAGTGGAGATCTTTGGTCAAGAAGCCTCTGGGAAGACGACGATT
EST: gi|18343928|gb|BJ175966.1|BJ175966
EST:     CCGGCTCTCTAAACCTCGACATTGCTCTAGGTGTTGGCGGTCTGCCAAAG                         GGCCGGGTAGTGGAG
genomic: CTGGCTCTCTAAACCTCGACATTGCTCTAGGTGTTGGCGGTCTGCCAAAGgtgagttctt ... catgcgccagGGCCGGGTAGTGGAG
EST: gi|18362739|gb|BJ194810.1|BJ194810
EST:     CTGGCTCTCTAAACCTCGACATTGCTCTAGGTGTTGGCGGTCTGCCAAAG                         GGCCGGGTAGTGGAGATCTTT
genomic: CTGGCTCTCTAAACCTCGACATTGCTCTAGGTGTTGGCGGTCTGCCAAAGgtgagttctt ... catgcgccagGGCCGGGTAGTGGAGATCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatgtgctcatttctaaagtaattgatgtaactcacctgcgttcatgcgccagGGCCGGGTAGTGGAGATCTTTGGTCAAGAAGCCTCTGGGAAGACGACGATTGCTCTTCACGTGATTGCACAGGCCCAAAAAATGGGAAAAG
                               aactcac  putative branch site (score: 2)
           atttctaaagtaatt  TA-rich tract