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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTATCGCTCAAGGAAACGAGTTCTCATATTACATGCTTATATGCTCCAGCTTTATTCTAAACCAgtaagtctgttcacttttttttcttaatttcctttgcagtttggatatgcacatctctgttcatataaatatgtttttagaatgcatctgcttttaatag...

Basic information

species Physcomitrella patens
transcript PP1S98_148V6.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S98_148V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA20G16030.1 (Glycine max), 5'ss of exon 11
GTTTTATCGCTCAAGGAAACGAGTTCTCATATTACATGCTTATATGCTCCAGCTTTATTCTAAACCAgtaagtctgttcacttttttttcttaatttcctttgcagtttggatatgcacatctctgttcatataaatatgtttttagaatgcatctgct--tttaatag------------------------------------------------
| ||||||  ||| ||||| || || ||||| |||||| | |||||||| ||||||||||| ||||||||||  |      | | | ||  |  |||   |||    |   | | |||  |   | ||  | | ||       | |  ||   | | ||  |||  | |                                                
GATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAGCTTTATTCTTAACCAgtaagattaagggttatctctttcttgtttatcttgttaatgctaca-gcaattacttatttgtttgaagtcacagtgatgattgctgttctgattttttggtcttttctctttttgttctcaatcgattggcttgatggaacatttaag

upper sequence: PP1S98_148V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: GLYMA13G10730.1 (Glycine max), 5'ss of exon 13
GTTTTATCGCTCAAGGAAACGAGTTCTCATATTACATGCTTATATGCTCCAGCTTTATTCTAAACCAgtaagtct----gttcacttttttttcttaatttcctttgcagtttggatatgcacatctctgttc--atataaatatgtttttagaatgcatctgcttttaatag------------------------------------------------
| ||||||  ||| ||||| || || ||||| |||||| | |||||||| ||||||||||| ||||||||||  |    |||  || |||  | || || |  || |  |||   ||    || | | ||||   |  | |  | || || |       |||| ||||  | |                                                
GATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGCTTTATTCTTAACCAgtaagaataagggttatctctttcatgttgatcttgttagt-gttacaatgattacttgtttgttttgaagtcacaaagtgttgattgctgttctgattttt-tggtctttttgctttttgttctcaatcaattggcttgatggaacatttaag

upper sequence: PP1S98_148V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: Vv18s0041g00100.t01 (Vitis vinifera), 5'ss of exon 11
GTTTTATCGCTCAAGGAAACGAGTTCTCATATTACATGCTTATATGCTCCAGCTTTATTCTAAACCAgtaagtctgttcacttttttttcttaatttcctttgcagtttggatatgcacatctctgttcatataaatatgtttttagaat--gcatctgcttttaatag----------------------------------
|||| ||    ||||||||||| || |||||||||||| | |||||||| || |||||||| ||  ||| ||    ||||        ||| | |||      |  | || ||||    | || |   ||   |  ||| | |  | | |  |  | || | |   ||                                   
GTTTCATAAGCCAAGGAAACGAATTTTCATATTACATGATGATATGCTCAAGTTTTATTCTCAATAAgtgagaac-ttcatggcgacctct-agttttgccacctctatgcatatttctacctgtacacaagaatttatttctccatactcaggctttgttatccttacatgcccttctttgggtttacttatttttaactag