1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtatacgcgatattttagttaggattgagtaattgtttattattggaggtgttgatcactgtcagtatgttaagtgcatggtactgttcttttcctagcggtggacttcacaggattcatgcctgaagataatcatcctgtttccgtatcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTAAAGAGACTCAAACATCAGCTGGACTAAAACTGTTCCACAAACTTGAGA
species | Physcomitrella patens |
transcript | PP1S98_145V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTG ATGGAATTGGCA-GCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTEST: gi|162151635|gb|FC327764.1|FC327764
genomic: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTGgtgagtatac ... atcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTT
EST: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTG ATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTEST: gi|162262796|gb|FC439046.1|FC439046
genomic: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTGgtgagtatac ... atcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTT
EST: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTG ATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTEST: gi|162231014|gb|FC407269.1|FC407269
genomic: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTGgtgagtatac ... atcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTT
EST: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTG ATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTEST: gi|162231013|gb|FC407268.1|FC407268
genomic: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTGgtgagtatac ... atcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTT
EST: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTG ATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTEST: gi|162193501|gb|FC370404.1|FC370404
genomic: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTGgtgagtatac ... atcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTT
EST: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTG ATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTT
genomic: ACGCACTGCACTCCTCGCTTTCTAAAGTCACTGAGCATTACATGAAGCTGgtgagtatac ... atcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTT
ggacttcacaggattcatgcctgaagataatcatcctgtttccgtatcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTAAAGAGACTCAAACATCAGCTGGACTAAAACTGTTCCACAAACTTGAGA
aagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatacgcgatattttagttaggattgagtaattgtttattattggaggtgttgatcactgtcagtatgttaagtgcatggtactgttcttttcctagcggtggacttcacaggattcatgcctgaagataatcatcctgtttccgtatcgctgcagATGGAATTGGCAAGCAAGTCTAAAGCAGAATTTGGGTCTGACGAGAAGCTTAAAGAGACTCAAACATCAGCTGGACTAAAACTGTTCCACAAACTTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA