1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATGTATGCTACATGTATCTGGGTTGCGCAGCTATTGTTGGTCCTGAGCAAGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTGgtgcgtgactactttgaatattatttttgtttccgactttctttatgcgtgccatgatgttgctgcatttaatgtcttttctattttaaacctgcacatc...
species | Physcomitrella patens |
transcript | PP1S98_119V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTG GTAGACTCTTTTCATGTTTTGCGAAGGAGTGACCCTCCATTTGTGACGCCTEST: gi|162255850|gb|FC431926.1|FC431926
genomic: AGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTGgtgcgtgact ... gttttatcagGTAGACTCTTTTCATGTTTTGCGAAGGAGTGACCCTCCATTTGTGACGCCT
EST: AGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTG GTAGACTCTTTTCATGTTTTGCGAAGGAGTGACCCTCCATTTGTGACGCCTEST: gi|162171502|gb|FC347804.1|FC347804
genomic: AGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTGgtgcgtgact ... gttttatcagGTAGACTCTTTTCATGTTTTGCGAAGGAGTGACCCTCCATTTGTGACGCCT
EST: AGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTG GTAGACTCTTTTCATGTTTTGCGAAGGAGTGACCCTTCATTTGTGACGCCT
genomic: AGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTGgtgcgtgact ... gttttatcagGTAGACTCTTTTCATGTTTTGCGAAGGAGTGACCCTCCATTTGTGACGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTATGCTACATGTATCTGGGTTGCGCAGCTATTGTTGGTCCTGAGCAAGAAAGATTCTATTTTTAGCTTCGTTCCAGAGTTCTATGTGGAGACTTTGgtgcgtgactactttgaatattatttttgtttccgactttctttatgcgtgccatgatgttgctgcatttaatgtcttttctattttaaacctgcacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA