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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcccactattagatttccacactgctgttgttttccctcatttcattagaatcaacttcagattcatgttactcaccaaatatcattgtttctttacagCCGAAATTTTTTTTGATAGAATTCAACTTATAATTGTATTAGATACAAATAAAACTATTATTTGTGAACAAATGGGCGTATTTCTTTCAAGCATTGCTTC

Basic information

species Physcomitrella patens
transcript PP1S97_89V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37852135|gb|BJ610143.1|BJ610143
EST:     GAATGCCCCTCCTCCGCTCTCAACAGAATCACCGGCACCTGTATCGCAGG                         CCGAAANNNNNNNNGATAGAATTCAACTTATAATTGTATTAGATACAAATA
genomic: GAATGCCCCTCCTCCGCTCTCAACAGAATCACCGGCACCTGTATCGCAGGgtatgtgctt ... ttctttacagCCGAAATTTTTTTTGATAGAATTCAACTTATAATTGTATTAGATACAAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagaatcaacttcagattcatgttactcaccaaatatcattgtttctttacagCCGAAATTTTTTTTGATAGAATTCAACTTATAATTGTATTAGATACAAATAAAACTATTATTTGTGAACAAATGGGCGTATTTCTTTCAAGCATTGCTTC
                         tactcac  putative branch site (score: 1)
                                         ttgtttcttt  putative PPT
                                 aaatatcattgttt  TA-rich tract