1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACGCTGGCATCACGGTTTGGAAATCATACTGTTCAGCTGCCTGCAGTTTTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAGgtaaagcggttgctgttcttctcttgattttcagtgtcaaatcattttaaactgtgcacagtagactcaaactagacctcgtactcacttaattgatatcatccctaagaatcctgtgttgtgtttcagcag
species | Physcomitrella patens |
transcript | PP1S97_89V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAG GGGCTGGTTTCAATCTAAAAAGATCAAGTTTGCTGCCATCGTTGCTGGAGTEST: gi|67701380|gb|BJ961613.1|BJ961613
genomic: TTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAGgtaaagcggt ... gtttcagcagGGGCTGGTTTCAATCTAAAAAGATCAAGGTTGCTGCCATCGTTGCTGGAGT
EST: TTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAG GGGCTGGTTTCAATCTAAAAAGATCAAGTTTGCTGCCATCGTTGCTGGAGTEST: gi|37852135|gb|BJ610143.1|BJ610143
genomic: TTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAGgtaaagcggt ... gtttcagcagGGGCTGGTTTCAATCTAAAAAGATCAAGGTTGCTGCCATCGTTGCTGGAGT
EST: TTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAG GGGCTGGTTTCAATCTAAAAAGATCAAGGTTGCTGCCATCGTTGCTGGAGT
genomic: TTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAGgtaaagcggt ... gtttcagcagGGGCTGGTTTCAATCTAAAAAGATCAAGGTTGCTGCCATCGTTGCTGGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCTGGCATCACGGTTTGGAAATCATACTGTTCAGCTGCCTGCAGTTTTTGGTACATATACTCTGAAAAGCTGGAAAGGTCTGCCTCCTTCACGAAGgtaaagcggttgctgttcttctcttgattttcagtgtcaaatcattttaaactgtgcacagtagactcaaactagacctcgtactcacttaattgatatcatccctaagaatcctgtgttgtgtttcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA