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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgttatcccgcaaaggaaacataaccgaggtgaagttgatgtaccagtttacatcactgatggtcttattctgaactatgtgtatggttggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGACTCTTACAGCCCGAAGTAACCAG

Basic information

species Physcomitrella patens
transcript PP1S97_54V6.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208368661|gb|DC947936.1|DC947936
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|37841964|gb|BJ599972.1|BJ599972
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18326676|gb|BJ158675.1|BJ158675
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|67692998|gb|BJ953231.1|BJ953231
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|37835663|gb|BJ593675.1|BJ593675
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18337853|gb|BJ169877.1|BJ169877
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|208388641|gb|DC953431.1|DC953431
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18338064|gb|BJ170088.1|BJ170088
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18341780|gb|BJ173815.1|BJ173815
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|37845267|gb|BJ603275.1|BJ603275
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|67696509|gb|BJ956742.1|BJ956742
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|162258316|gb|FC434243.1|FC434243
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|208373911|gb|DC940422.1|DC940422
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18330055|gb|BJ162061.1|BJ162061
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|37850242|gb|BJ608250.1|BJ608250
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|37835745|gb|BJ593757.1|BJ593757
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|162248874|gb|FC422881.1|FC422881
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|37853392|gb|BJ611400.1|BJ611400
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|162258317|gb|FC434244.1|FC434244
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|67573124|gb|BJ945948.1|BJ945948
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|67569732|gb|BJ942556.1|BJ942556
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18361892|gb|BJ193959.1|BJ193959
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|162210550|gb|FC386846.1|FC386846
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|162249476|gb|FC426746.1|FC426746
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|67697554|gb|BJ957787.1|BJ957787
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|67508263|gb|BJ941132.1|BJ941132
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttacatcactgatggtcttattctgaactatgtgtatggttggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGACTCTTACAGCCCGAAGTAACCAG
          cactgat  putative branch site (score: 3)
                   tcttatt  TA-rich tract