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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgttatcccgcaaaggaaacataaccgaggtgaagttgatgtaccagtttacatcactgatggtcttattctgaactatgtgtatggttggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGACTCTTACAGCCCGAAGTAACCAG

Basic information

species Physcomitrella patens
transcript PP1S97_54V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18368953|gb|BJ201038.1|BJ201038
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18326676|gb|BJ158675.1|BJ158675
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18330055|gb|BJ162061.1|BJ162061
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|18361892|gb|BJ193959.1|BJ193959
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: gi|37850242|gb|BJ608250.1|BJ608250
EST:     ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG                         CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttacatcactgatggtcttattctgaactatgtgtatggttggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGACTCTTACAGCCCGAAGTAACCAG
          cactgat  putative branch site (score: 3)
                   tcttatt  TA-rich tract