1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaaatgtcgcccgagtgaaactgatatgtgtttcttcttcactgtgtttagttcgattttttgcttttgttttcgtggagcttgacactcaggtgccccttgttggatattactcttctcggatcgtacatctgatggttctctcttggtgtttgggtgtttgtttccttccttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
species | Physcomitrella patens |
transcript | PP1S97_54V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAG ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGEST: gi|18326676|gb|BJ158675.1|BJ158675
genomic: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAGgtgaaatgtc ... ttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
EST: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAG ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGEST: gi|18330055|gb|BJ162061.1|BJ162061
genomic: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAGgtgaaatgtc ... ttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
EST: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAG ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGEST: gi|18361892|gb|BJ193959.1|BJ193959
genomic: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAGgtgaaatgtc ... ttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
EST: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAG ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGEST: gi|37850242|gb|BJ608250.1|BJ608250
genomic: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAGgtgaaatgtc ... ttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
EST: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAG ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
genomic: TATTTCGACTTATTCGACGCTAGTGCCGAAGCATGGATAATTTGGGGCAGgtgaaatgtc ... ttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
acatctgatggttctctcttggtgtttgggtgtttgtttccttccttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
atctgat putative branch site (score: 4)
tgtttgtttccttcct putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatgtcgcccgagtgaaactgatatgtgtttcttcttcactgtgtttagttcgattttttgcttttgttttcgtggagcttgacactcaggtgccccttgttggatattactcttctcggatcgtacatctgatggttctctcttggtgtttgggtgtttgtttccttccttgtttacagACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG