1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagcagattttgaagcttaagaagttggtgagaagagttaatggttgtcacttctttcatgactctagattcaaggtctgcaattttcacttttgcttatgttcaaggtgttcatatgtactatggatgcctatgattgtgcattctcttacttgaagtaagactctgagaattgtgtttctgttgagagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGAGCACTTAAAAAAGCTGGTGCCTTATTTTCTTGAGGCTCAGATGATGGA
species | Physcomitrella patens |
transcript | PP1S97_286V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGEST: gi|18336617|gb|BJ168640.1|BJ168640
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGEST: gi|162279247|gb|FC455794.1|FC455794
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGEST: gi|37841204|gb|BJ599212.1|BJ599212
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGEST: gi|208365988|gb|DC951111.1|DC951111
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGEST: gi|162279246|gb|FC455793.1|FC455793
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGEST: gi|208381547|gb|DC923133.1|DC923133
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAGTGEST: gi|37822157|gb|BJ580223.1|BJ580223
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGEST: gi|162176651|gb|FC352496.1|FC352496
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
EST: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAG GGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
genomic: CATACGGAAATAATGCCTCACGACCTGGAACCCCGCCTCGTGTAGTTAAGgtcagcagat ... agagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATG
cattctcttacttgaagtaagactctgagaattgtgtttctgttgagagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGAGCACTTAAAAAAGCTGGTGCCTTATTTTCTTGAGGCTCAGATGATGGA
ctcttac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcagattttgaagcttaagaagttggtgagaagagttaatggttgtcacttctttcatgactctagattcaaggtctgcaattttcacttttgcttatgttcaaggtgttcatatgtactatggatgcctatgattgtgcattctcttacttgaagtaagactctgagaattgtgtttctgttgagagtgccagGGATAATATCGGATGATGGACATGAGCGTGAGAAACAAAGTTATTAAAATGAGCACTTAAAAAAGCTGGTGCCTTATTTTCTTGAGGCTCAGATGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA