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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA

Basic information

species Physcomitrella patens
transcript PP1S97_286V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os03g16110.1 (Oryza sativa), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
              | | ||   | ||  |  ||| ||||    |  || |||| |        |    |   |  || | | |   |||| |  | ||||| || |||||||| ||||| || || ||  |  | ||||| || ||||| || || |||||||| ||||||||||||||||||||||| ||||||||||
-------------gtacaattttaatgcaacatcttttccttt-cagtattttttttggtcaactgaggtgatcatatttatatttcatgtgatgt-cagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATATTCTCAGCTCCAAACTATTGTGGTGAATTTGATAATGCAGGTGCAATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g24750.1 (Oryza sativa), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
                        |   ||    |  |     | | |  |||| | |  |  |     |||    || |  |   ||   |   |  |||| || |||||||| || || || || ||  |  |   | | || || || ||||| |||||||| |||||||| ||||||||||||||||||||  || 
-----------------------gtaagcactaattattt-tgatctttattttgtctgttgagatctatataacaatttcagcatgaa--tgtctttagGTTGTTGAGGATGGCTACGAGTTCTTTGCGCAAAGGAGATTAGTGACAATCTTTTCAGCTCCAAACTATTGTGGGGAATTTGATAATGCGGGTGCTCTGT

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os06g06880.1 (Oryza sativa), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtg-tgggatgttacat-acagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
        |||| ||| | ||   |  || | |   |   |  |     |  || | ||  ||    |||   ||| | |||| |||||| ||   | |||||| || |||||||| |||||||| || ||||||||||| || || ||||| || ||||| || || |||||||| || ||||| |||||||| || ||||
tttctcagtgaatctctgctgtagtgaac-tattattgttattattgagcgattgtctttatttaccact-cactgctttgtgctgggatcttctctgacagGTTGTGGAGGATGGCTATGAATTCTTTGCTAAGCGCCAGCTTGTAACCATATTCTCTGCACCCAACTATTGTGGCGAGTTTGACAATGCGGGGGCGATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G160237_T02 (Zea mays), 3'ss of exon 3
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgat-ctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
|       | | | |    |||   |    | |   |      |    ||  ||| | |     |  |   || | ||  ||  || ||||| |  | ||||| || |||||||| ||||||||||| ||| |  | || || || ||||| || || || || |||||||||||||||||||||||||| ||||||||||
gtaccgccttagcatttagtgcagcttctgttttgatctttttatttcacagtta-actggaaattgaaggtgtttatattgcatgcgatgtgatgt-cagGTTGTCGAGGATGGGTATGAATTTTTTGCTGACAGACAGCTTGTCACCATATTCTCGGCCCCCAATTATTGTGGTGAATTTGATAATGCTGGTGCAATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G016930_T01 (Zea mays), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatatt-ctttgtatactat--gctgatctgtgtgggatgttacat-acagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
 |   || |  |   |  ||  | ||||  |||    |  || |   |  || |  ||| | |||  ||| ||   ||  |||      ||   ||| | |||||| |||||||||||||||||||||||||| || ||||| || || || || || || || || || || ||||| || || || ||||| |||||| |||
-aaacatctagagtgctcatctg-ttgagctgtgaaat--actattttggttgtgcattgccttgattaccattgacttctcttcaactgaatctacttcacagGTCGTAGAGGATGGTTATGAATTTTTCGCAAAACGCCAGCTTGTAACAATATTCTCAGCACCGAACTACTGTGGAGAGTTCGACAATGCTGGTGCACTGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G120202_T01 (Zea mays), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttat-attctttgtatactatgctgatctgtgtgggatgttacat--acagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
 | ||| |   ||   | |     ||| |||||       |      | ||||| |     ||  | |   |   |     ||    |    ||| |  | |||| ||||| ||||| || || || || ||  || |   ||| || ||||| ||||| |||||||| || ||||| |||||||||||||| |||||  |  
aatgaaatgataca--caacttttttg-catgttcaagaaaatgatgttcttttttcgagattcatgtggcaatttttaacgtaattgtccctacctccatagGTGGTAGAAGATGGCTACGAGTTCTTTGCAGAGAGAAGACTAGTGACCATCTTTTCAGCTCCAAACTACTGTGGCGAATTTGATAATGCAGGTGCTCTAT

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM5G899390_T01 (Zea mays), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccat-acttttatattctttgtat-actatgctgatctgtgtg--ggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
   |  | ||||  ||         |  | ||| |  ||    |   |   || | |  |||||   | || ||||||    |  |   | ||||  |    |||| || || ||||| ||||| || || ||  | ||   | | || || || ||||| ||||||||||||||||| || ||||||||||  || ||  |  
---gtttgtgaaagtctatctt--ctatcctgttttatcagttatttttggttctctgatctttacctgacaatgctggcacgcttcatgaatgtccc---tagGTGGTTGAAGATGGCTATGAGTTCTTTGCACAACGAAGATTAGTGACAATCTTTTCAGCTCCAAATTATTGTGGAGAGTTTGATAATGTTGGCGCTCTTT

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA02G41890.2 (Glycine max), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatacta-tgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
| |    |||    |   |    | | |     ||  || |  |  | |   ||| | |  |  |    || ||   |      |   |  ||  ||  |||| ||||||||||| |||||||| || ||| |  | ||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| ||||
gtcactcttggtttttttacaatactcattcagcttctctagta--aaaaggttaaacttatgatgctttactggacactgacattataacttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATATTTTCAGCTCCAAACTATTGTGGTGAATTTGACAATGCTGGTGCGATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA05G37370.1 (Glycine max), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatct----gtgtgggatgttacata-cagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
     ||    |  |     ||  ||| | || ||| ||   |   || | ||  ||    | || || | |  |  | |     | | ||   ||   |  ||||| ||||||||||| ||||| ||||| || ||||| || ||||| || || || || || |||||||| || ||||||||||||||||| ||||| ||||
----tatgctgatgtattgggcatttg-cttggctcatcagtcttaatccattggtaaatctggtttaatgttttccttttaaaattttgggctttgtgtttcagGTTGTAGAGGATGGATATGAGTTTTTTGCCAAGCGTCAGCTGGTGACGATATTCTCCGCACCAAATTACTGCGGTGAATTTGATAATGCTGGTGCTATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA14G07080.1 (Glycine max), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatacta-tgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
              |    | | ||   |||     ||| |  |  | |   |||         |    || ||   |      |   |  ||  ||  |||| ||||||||||| |||||||| || ||| |  |  |||| ||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| ||||
----gtcactgtttttttttacaatactcattcagtttctataataaaaaggttaagcgtacgatgctttactggacactgacattataaattttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGAAACTTGTTACGATATTTTCAGCTCCAAACTATTGTGGTGAATTTGACAATGCTGGTGCGATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA19G42050.1 (Glycine max), 3'ss of exon 2
---------gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
           |  | || |||||  |       ||   |   ||||||| |  | |    | |    ||   | |||| | ||  | | | |      |||   | |||| || |||||||| ||||| ||||| |||||  |   | | || || || |||||||||||||||||| |||| |||||||| ||||| |||||  || 
ttccttgctttcttactttaacctttgtcttttatgtgttacttcttccaacttcctctgatcaaggcctcattttactttcctatttttttt------tta---atagGTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATATTTTCTGCTCCAAATTATGGTGGGGAATTTGACAATGCTGGTGCGTTGT

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA08G02180.1 (Glycine max), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttat-attct--ttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
 | | ||| |  | |  | |  | |   ||    |  ||||     ||   ||  | | |||  || |||  | | ||  |     |  |  | |   || |||| ||||||||||| || || ||||| || ||||| || || || || || || || || ||||| || |||||||||||||||||||| ||||| ||||
-atgtatt-gggcatttgcttggctcatcagtcttaatccattttaatgaattggtgaatctggttttatgttttccttctaaaattttgg-gctttgtatagGTTGTAGAGGATGGATACGAGTTTTTTGCCAAGCGTCAGCTAGTGACTATATTCTCCGCACCAAACTACTGTGGTGAATTTGATAATGCTGGTGCTATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA03G39440.1 (Glycine max), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctg-tgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
  |     ||    |    |   |      | | |  |     ||  || |   |  | || ||   |   |     | |  | |   || ||    | |||| || |||||||| ||||| ||||| |||||  |   | | || || || |||||||||||||||||  |||| |||||||| ||||| |||||| || 
atcttccctgcttttttactttaacctttgtcttttatgtgttact-tattccaacttcctctggtcaaggtctcattttactttcctattttcttaatagGTTGTGGAGGATGGATATGAGTTTTTTGCTAAAAGAAGATTAGTCACGATATTTTCTGCTCCAAATTACGGTGGGGAATTTGACAATGCTGGTGCATTGT

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT3G46820.1 (Arabidopsis thaliana), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
              |   |     |  | |||| || || |      |  |||   |       | | ||  ||| |      |   ||| | |  |||||| ||||||||||| ||||| || || ||| |  | || || || || || |||||||||||||| || |||||||||||||| |||||||||||| |||
------------gttagtacattgtataaatgtttcctctagtttttttgtttgggaaatcgaatctgct--gctcaagaacctataatgctcc-cacagGTTGTAGAGGATGGGTATGAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGTGAATTTGACAATGCGGGTGCATTGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT5G59160.2 (Arabidopsis thaliana), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccacc-atacttttatattctttgtatactatg-ctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
      || |   |  | |  |  |   | | ||| ||  || |   ||        | |  |   | | |||  ||| | ||| |    | ||  | | |||| ||||||||||| ||||| ||||||||  |  | || || ||||| || ||||||||||| || || |||||||||||||| ||||| ||||| ||||
-----gttcg--tcgtctacacactgttcgtttctattttactaaagatgtcacggaacttctataaaaatataactgttgtgtttttctttttctaaa-agGTTGTAGAGGATGGATATGAGTTTTTCGCCGATAGACAGCTTGTTACGATATTTTCTGCTCCCAACTACTGTGGTGAATTTGACAATGCTGGTGCTATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT2G39840.1 (Arabidopsis thaliana), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacata-cagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
                        | || || | ||   ||   |  |    |  || |  || | |  | |    |   | || |||| ||  ||  ||||| || |||||||| ||||| || || ||| |  | ||||| || ||  | ||||| ||||| || || |||||||||||||||||||| ||||| ||||
-----------------------gtagatatttttcaatcatgtctctttgatactactgcttttgtgatgttaacaagggagttggattttttatggcagGTCGTGGAGGATGGGTATGAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTACTGTGGTGAATTTGATAATGCTGGTGCGATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv14s0036g00370.t01 (Vitis vinifera), 3'ss of exon 2
-gacgaatttgaacct--ccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
      ||||||   |    |||| ||    | | |  |||    | |  ||    |  | | ||  || |    | |  |||  |    |  | |  | ||||| |||||||||||||||||||| || || || || ||||| || ||||| ||||| || || ||||||||||| || ||||||||||| ||||| ||||
cataagatttgactgtaatggatgtgaggagcttattacttattactcattaggacttcaattttcatagag---gtttttctaagataaaattaatttgcagGTTGTAGAGGATGGTTATGAATTCTTTGCAAACCGGCAACTTGTAACCATATTTTCGGCGCCTAATTATTGTGGGGAGTTTGATAATGCTGGTGCCATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv06s0004g05530.t01 (Vitis vinifera), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
                               ||   | |||   || || | ||  ||| ||| ||    |||| | ||   |   | |  |   | ||||| || || ||||| |||||||| || ||  |  | || || ||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||
-------------------------------gttattgccattcccttattgttccattttttataactcatgcagctcacagatagcttctttttccagGTTGTGGAAGATGGATATGAATTCTTTGCAGACAGACAGCTTGTTACAATATTTTCTGCTCCCAACTATTGTGGTGAATTTGATAATGCTGGTGCAATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv13s0019g02410.t01 (Vitis vinifera), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
                    |  |||| ||| | |  |   |     | || || || || |  |  |   ||    |||   |  | | |       |||| || |||||||| |||||||| || ||  |  | ||||| |||||| | || || ||||| || || |||||||||||||||||||| ||||||||||
--------------------gttattggcatttttagttttctcttgttctattttactcatgctgaaaactgaaattcttcttttggtct-------agGTTGTGGAGGATGGATATGAATTCTTTGCCGATAGGCAACTTGTTACCGTATTCTCAGCTCCCAACTACTGTGGTGAATTTGATAATGCTGGTGCAATGA

upper sequence: PP1S97_286V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv05s0049g00890.t01 (Vitis vinifera), 3'ss of exon 2
gacgaatttgaacctccgatgcgattgacatgtctcttccaccaccatacttttatattctttgtatactatgctgat-ctgtgtgggatgttac-atacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
      ||| | |      |  | ||      | | ||       ||  | |||| |    |     | | | ||  | ||   |      ||    | ||||| || || ||||| || || ||||| |||||  | ||||| || ||||| ||||| || || ||||| |||||||| ||||||||||||||||| ||||
-----gtttcagctctgttttagctttttgcattttttttttggtca--cctttaaacctctcaggcatttttctcttactacatatttccttgttgtgcagGTTGTGGAAGATGGATACGAGTTTTTTGCTAATAGACAACTTGTAACCATATTTTCAGCACCTAATTACTGTGGTGAGTTTGATAATGCGGGTGCCATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279247|gb|FC455794.1|FC455794
EST:     AGAAGTTTCTACAAACCCACGACTTGGATCTCATCTGTCGAGCCCATCAA                         GTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
genomic: AG-AGTTTCTACAAACCCACGACTTGGATCTCATCTGTCGAGCCCATCAAgtattgtgat ... ttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
EST: gi|208365988|gb|DC951111.1|DC951111
EST:     CAGAGTTTCTACAAACCCACGACTTGGATCTCATCTGTCGAGCCCATCAA                         GTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
genomic: CAGAGTTTCTACAAACCCACGACTTGGATCTCATCTGTCGAGCCCATCAAgtattgtgat ... ttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
EST: gi|162279246|gb|FC455793.1|FC455793
EST:     GTCGAGCCCATCAA                         GTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
genomic: GTCGAGCCCATCAAgtattgtgat ... ttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
EST: gi|208381547|gb|DC923133.1|DC923133
EST:     GTCGAGCCCATCAA                         GTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
genomic: GTCGAGCCCATCAAgtattgtgat ... ttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
EST: gi|37822157|gb|BJ580223.1|BJ580223
EST:     CTGTCGAGCCCATCAA                         GTAGTAGAGGATGGTTATGAATTTTTCGNTAAGCGCCAACTGGTTACCATT
genomic: CTGTCGAGCCCATCAAgtattgtgat ... ttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
EST: gi|162176651|gb|FC352496.1|FC352496
EST:     CTGTCGAGCCCATCAA                         GTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT
genomic: CTGTCGAGCCCATCAAgtattgtgat ... ttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 9 (downstream exon)
Score: 5

GGGAGACAATGACCGAGGAGTCTCCTATACATTTGGTCCAGACACTGTCTCAGAGTTTCTACAAACCCACGACTTGGATCTCATCTGTCGAGCCCATCAAgtattgtgat ... ttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacttttatattctttgtatactatgctgatctgtgtgggatgttacatacagGTAGTAGAGGATGGTTATGAATTTTTCGCTAAGCGCCAACTGGTTACCATTTTTTCTGCTCCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA
                          tgctgat  putative branch site (score: 5)
     ttttatattctttgta  TA-rich tract