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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgagtagctccttcagtccgagtaatgaaatgctttctataaacaaaacctttgcttagagtctttgtcctgacctgaaacgtgggtgtttcgtatcagAGGGAGTGCTCACGATTACGGACCACAAACTGCACACATGTCTCAAACGCGGCGAACGATGTTCTTGCCAGGTCCCAGAAGGTCCTCCACGACTTTATCG

Basic information

species Physcomitrella patens
transcript PP1S96_236V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162246212|gb|FC424454.1|FC424454
EST:     GCTCCAGCCCTCTTGATGAATCCTGATTTTACTCCGAGAACTTCAATTTG                         AGGGAGTGCTCACGATTACGGACCACAAACTGCACACATGTCTCAAACGCG
genomic: GCTCCAGCCCTCTTGATGAATCCTGATTTTACTCCGAGAACTTCAATTTGgtaaagttca ... ttcgtatcagAGGGAGTGCTCACGATTACGGACCACAAACTGCACACATGTCTCAAACGCG
EST: gi|100416868|gb|BY993129.1|BY993129
EST:     GCTCCAGCCCTCTTGATGAATCCTGATTTTACTCCGAGAACTTCAATTTG                         AGGGAGTGCTCACGATTACGGACCACAAACTGCACACATGTCTCAAACGCG
genomic: GCTCCAGCCCTCTTGATGAATCCTGATTTTACTCCGAGAACTTCAATTTGgtaaagttca ... ttcgtatcagAGGGAGTGCTCACGATTACGGACCACAAACTGCACACATGTCTCAAACGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaacctttgcttagagtctttgtcctgacctgaaacgtgggtgtttcgtatcagAGGGAGTGCTCACGATTACGGACCACAAACTGCACACATGTCTCAAACGCGGCGAACGATGTTCTTGCCAGGTCCCAGAAGGTCCTCCACGACTTTATCG
                       tcctgac  putative branch site (score: 2)