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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTCGTATCTGGCCTTCTCAGCAACTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggcttatcaaccaggaattatctcgtctttcattaggagtaggcagagattggtaaagatcaatggcaagaagatgcgtctctgggaaagtcgttt...

Basic information

species Physcomitrella patens
transcript PP1S96_202V6.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162209|gb|FC337991.1|FC337991
EST:     CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAG                         ATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAA
genomic: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggctta ... tgatctgcagATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAA
EST: gi|162153810|gb|FC329941.1|FC329941
EST:     CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAG                         ATACCTGCGCTANCA-TTATACTTGCGT
genomic: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggctta ... tgatctgcagATACCTGCGCTA-CAATTATACTTGCGT
EST: gi|162167081|gb|FC342543.1|FC342543
EST:     CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAG                         ATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAA
genomic: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggctta ... tgatctgcagATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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GTTTCTCGTATCTGGCCTTCTCAGCAACTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggcttatcaaccaggaattatctcgtctttcattaggagtaggcagagattggtaaagatcaatggcaagaagatgcgtctctgggaaagtcgttt

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