1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ggtttaatgacatgtgaattatttctgcatatggtgccttcatttggtcttagcaaaatgctgaacaagaaaatttcctttttaaaaatttgatctgcagATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAAGGAGTGCACATAACGTCGTCTGCCTATCTTACCTCTACTGTCCACGTCA
species | Physcomitrella patens |
transcript | PP1S96_202V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAG ATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAAEST: gi|162153810|gb|FC329941.1|FC329941
genomic: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggctta ... tgatctgcagATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAA
EST: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAG ATACCTGCGCTANCA-TTATACTTGCGTEST: gi|162167081|gb|FC342543.1|FC342543
genomic: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggctta ... tgatctgcagATACCTGCGCTA-CAATTATACTTGCGT
EST: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAG ATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAA
genomic: CTGCTGCATTTATGCAGCATCTTGTGCTTTATTTCTGGAATCGCTTTGAGgtgaggctta ... tgatctgcagATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAA
ggtcttagcaaaatgctgaacaagaaaatttcctttttaaaaatttgatctgcagATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAAGGAGTGCACATAACGTCGTCTGCCTATCTTACCTCTACTGTCCACGTCA
atttgat putative branch site (score: 5)
aacaagaaaatttcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttaatgacatgtgaattatttctgcatatggtgccttcatttggtcttagcaaaatgctgaacaagaaaatttcctttttaaaaatttgatctgcagATACCTGCGCTACAATTATACTTGCGTAGGCAGGCGATGCTACAACATCAAGGAGTGCACATAACGTCGTCTGCCTATCTTACCTCTACTGTCCACGTCA
- - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa