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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgatctttgttttcgttctcggtagtctcactctgtctaactagacatcgaaaggacccagattgagcaaatgtttttaacttcattttattcctccagATTATCCGGTCCTTCACTCGGCACAATGTCGGTGGCAGCCCAGCTGACAAGGGAACTACATTGGCAAACAGCACCAGTAATTGAGTTTGATTCTTTATTG

Basic information

species Physcomitrella patens
transcript PP1S96_157V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15327393|gb|BI488032.1|BI488032
EST:     TCTGCCTGATGATGTGTCCTGTCGGGATCATTTCTCATGTGATCACCAAG                         ATTATCCGGTCCTTCACTCGGCACAATGTCGGTGGCAGCCCAGCTGACAAG
genomic: TCTGCCTGATGATGTGTCCTGTCGGGATCATTTCTCATGTGATCACCAAGgtgcacttac ... attcctccagATTATCCGGTCCTTCACTCGGCACAATGTCGGTGGCAGCCCAGCTGACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcgaaaggacccagattgagcaaatgtttttaacttcattttattcctccagATTATCCGGTCCTTCACTCGGCACAATGTCGGTGGCAGCCCAGCTGACAAGGGAACTACATTGGCAAACAGCACCAGTAATTGAGTTTGATTCTTTATTG
                              ttttaac  putative branch site (score: 2)
                                    cttcattttattcctc  CT-rich tract
                        aaatgtttttaacttc  TA-rich tract