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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtctgctcattgccaccacgtctcgaattgtcctcgctattatactctttgttaaaaaaaggtacgttgtcactatctaaggtgggaaatcatcctttcaccaagagcaggtttgatgtttcttgtgttctttagGTACGTATATCTGGATGGTCTAAAGCTCAAAGTGGAGACGCGCCACTCGCTTGTATTCTGCCTGATGATGTGTCCTGTCGGGATCATTTCTCATGTGATC

Basic information

species Physcomitrella patens
transcript PP1S96_157V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15327393|gb|BI488032.1|BI488032
EST:     GTGGCCTCAGCTTGGATCCACTTGCTTCTAGCTGACCTTGCCTGTGCTCG                         GTACGTATATCTGGATGGTCTAAAGCTCAAAGTGGAGACGCGCCACTCGCT
genomic: GTGGCCTCAGCTTGGATCCACTTGCTTCTAGCTGACCTTGCCTGTGCTCGgtaagtgtct ... tgttctttagGTACGTATATCTGGATGGTCTAAAGCTCAAAGTGGAGACGCGCCACTCGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgggaaatcatcctttcaccaagagcaggtttgatgtttcttgtgttctttagGTACGTATATCTGGATGGTCTAAAGCTCAAAGTGGAGACGCGCCACTCGCTTGTATTCTGCCTGATGATGTGTCCTGTCGGGATCATTTCTCATGTGATC
                              gtttgat  putative branch site (score: 5)
                                      tttcttgtgttcttt  CT-rich tract
      aaatcat  TA-rich tract