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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGATTCGAGCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAGgtgctttctagaatgtctttaacattatgataattgctccagatgttatcaagggattcgtcgagagtttctctaaatatattgattcattataatgcta...

Basic information

species Physcomitrella patens
transcript PP1S96_156V6.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37837723|gb|BJ595731.1|BJ595731
EST:     GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAG                         GTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG
genomic: GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAGgtgctttcta ... ctttttgcagGTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG
EST: gi|37845932|gb|BJ603940.1|BJ603940
EST:     GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAG                         GTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG
genomic: GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAGgtgctttcta ... ctttttgcagGTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG
EST: gi|37850741|gb|BJ608749.1|BJ608749
EST:     GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAG                         GTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG
genomic: GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAGgtgctttcta ... ctttttgcagGTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG
EST: gi|37844229|gb|BJ602237.1|BJ602237
EST:     GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAG                         GTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG
genomic: GCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTGAGAAGgtgctttcta ... ctttttgcagGTTTCTTTGAGGGGTAACTACTCGTATGGGGAAGACAATTTACGCATG