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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTCGAGTTGAATGACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcactgtataagtgctgatagttgtagcagcctctcggcagcattatgtctaacacttcagagtgatatatttgatattcag

Basic information

species Physcomitrella patens
transcript PP1S96_156V6.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37837723|gb|BJ595731.1|BJ595731
EST:     ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG                         GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
EST: gi|37845932|gb|BJ603940.1|BJ603940
EST:     ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG                         GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
EST: gi|37850741|gb|BJ608749.1|BJ608749
EST:     ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG                         GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
EST: gi|37844229|gb|BJ602237.1|BJ602237
EST:     ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG                         GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
EST: gi|19780685|gb|BQ039595.1|BQ039595
EST:     ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG                         GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT