1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...atgcatttggttgttgttccttgcaaattcttgaaagggtgaagctcatgcaaacaagtgactgaggtttgtttcaaagctgaataaatctctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCTTTATGCCTTTTGTGTGGAGACCTCTGTTGTGCAGTCGGTCCACGGCCT
species | Physcomitrella patens |
transcript | PP1S96_129V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCEST: gi|208388970|gb|DC932998.1|DC932998
genomic: TGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
EST: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCEST: gi|208374244|gb|DC945290.1|DC945290
genomic: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
EST: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCEST: gi|208368510|gb|DC939945.1|DC939945
genomic: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
EST: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCEST: gi|208386047|gb|DC956563.1|DC956563
genomic: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
EST: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCEST: gi|208362439|gb|DC930972.1|DC930972
genomic: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
EST: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGEST: gi|208360379|gb|DC930774.1|DC930774
genomic: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGG
EST: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCEST: gi|208372703|gb|DC952590.1|DC952590
genomic: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
EST: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAG ATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
genomic: CCGTTCAGATTGATGCACCTGCCACGTCTGTTTCAGGAACTTCTGCAAAGgtatgtatct ... tctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGC
tcatgcaaacaagtgactgaggtttgtttcaaagctgaataaatctctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCTTTATGCCTTTTGTGTGGAGACCTCTGTTGTGCAGTCGGTCCACGGCCT
tctctcgt CT-rich tract
tgaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatttggttgttgttccttgcaaattcttgaaagggtgaagctcatgcaaacaagtgactgaggtttgtttcaaagctgaataaatctctcgtgcagATATGTTAAAGAACGGTGTCCTCGGTGCAAGACAGTCCCTGATAGGCCTGCTTTATGCCTTTTGTGTGGAGACCTCTGTTGTGCAGTCGGTCCACGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - ctcatgc