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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCACAGCAAGGGTGGCAACTGCGTGGTATTGTACGCATCGAAGTACCATGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccctgtccattggcagttgcctcgtctttccaacatgaggatttctaccgttgcaggtgctacatgttcggtccgcgccgcaatagcacgtag...

Basic information

species Physcomitrella patens
transcript PP1S96_127V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37836221|gb|BJ594229.1|BJ594229
EST:     TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG                         GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST: gi|7047414|gb|AW477308.1|AW477308
EST:     TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG                         GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST: gi|67726020|gb|BJ976279.1|BJ976279
EST:     TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG                         GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST: gi|37828897|gb|BJ586909.1|BJ586909
EST:     GTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG                         GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: GTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST: gi|67692715|gb|BJ952948.1|BJ952948
EST:     TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG                         GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST: gi|37849599|gb|BJ607607.1|BJ607607
EST:     TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCNTAGAGAAAG                         GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG