Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37836221|gb|BJ594229.1|BJ594229EST: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST:
gi|7047414|gb|AW477308.1|AW477308EST: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST:
gi|67726020|gb|BJ976279.1|BJ976279EST: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST:
gi|37828897|gb|BJ586909.1|BJ586909EST: GTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: GTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST:
gi|67692715|gb|BJ952948.1|BJ952948EST: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAG GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
EST:
gi|37849599|gb|BJ607607.1|BJ607607EST: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCNTAGAGAAAG GGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
genomic: TGACGTGCCCTGTGTGATCAACATCAGCGGCCGATTTGCCCTAGAGAAAGgtcagtgccc ... ttgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggaatcctgcacgtttgtaattttttggcgattggctccttggattgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATGAAGGAGTTCTGGACATCAAAGATGCAGCTGGAAATGTTGAGTACCAGGT
tttgtaatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctctcttttagtactccgcaactctttcacttggcgcagcgttggggaatcctgcacgtttgtaattttttggcgattggctccttggattgagtacagGGATCCTGGAGCGATTCGGGGGGCAAGAAGGGCTAAAGAAGTTGGAAGATGAAGGAGTTCTGGACATCAAAGATGCAGCTGGAAATGTTGAGTACCAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA