1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactgttaggggagtgattgatttcggctcatgaattacttgtcatcatccaaatcattcctgtgcacttaaaaacaaattttcacttcatcgtttctgatatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGTAGGAGACCTGTCAGCGGTACACGTAAAACTAAATCTGAGCACTAGGTAG
species | Physcomitrella patens |
transcript | PP1S95_92V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAG AGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGTEST: gi|162261896|gb|FC438420.1|FC438420
genomic: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAGgtactgttag ... tatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGT
EST: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAG AGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGTEST: gi|37850673|gb|BJ608681.1|BJ608681
genomic: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAGgtactgttag ... tatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGT
EST: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAG AGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGTEST: gi|37841628|gb|BJ599636.1|BJ599636
genomic: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAGgtactgttag ... tatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGT
EST: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAG AGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGTEST: gi|162159615|gb|FC335793.1|FC335793
genomic: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAGgtactgttag ... tatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGT
EST: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAG AGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTTTGCTCCGCAATGT
genomic: AAAGTGGTTGCGGAGGTCGAAATCTCCTTTAACTCCAACCTCTCTATCAGgtactgttag ... tatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGT
cattcctgtgcacttaaaaacaaattttcacttcatcgtttctgatatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGTAGGAGACCTGTCAGCGGTACACGTAAAACTAAATCTGAGCACTAGGTAG
ttctgat putative branch site (score: 8)
acttaaaaacaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttaggggagtgattgatttcggctcatgaattacttgtcatcatccaaatcattcctgtgcacttaaaaacaaattttcacttcatcgtttctgatatcttgtagAGATGCAAAGAAGCATGGAAGTAACATTGAGACTTGTCTGCTCCGCAATGTAGGAGACCTGTCAGCGGTACACGTAAAACTAAATCTGAGCACTAGGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA