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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgagaaagccgcttcgagtttgcgcaacgggagcttatcacgtggatgtagcgctaattgttggagttgtgctcactgtttctggggtttcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGATGTTAAATCTGTCCTCTTGAGATTGGATAGTGTCTCTCCTTCTAAGGTGG

Basic information

species Physcomitrella patens
transcript PP1S95_7V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67508362|gb|BJ941230.1|BJ941230
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
EST: gi|18358738|gb|BJ190797.1|BJ190797
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
EST: gi|18348552|gb|BJ180601.1|BJ180601
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
EST: gi|162256088|gb|FC431261.1|FC431261
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
EST: gi|18361737|gb|BJ193804.1|BJ193804
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCTTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTTCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
EST: gi|67575796|gb|BJ948620.1|BJ948620
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
EST: gi|18373919|gb|BJ205497.1|BJ205497
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCTTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTTCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT
EST: gi|18359771|gb|BJ191832.1|BJ191832
EST:     AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCTTCTGTTTTTCAG                         TTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTTCTTGAACGCTGAT
genomic: AGAGGATCCGACAGCACCGTGGAGGGAGGCTCGGACCCTCTGTTTTTCAGgtgagtgacg ... tcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtagcgctaattgttggagttgtgctcactgtttctggggtttcgtgtgcagTTTGGAGCAGAGTAAGGAGTAAGAAGGAATAGCCGGTGCTTGAACGCTGATGTTAAATCTGTCCTCTTGAGATTGGATAGTGTCTCTCCTTCTAAGGTGG
                         tgctcac  putative branch site (score: 2)
          taattgtt  TA-rich tract