1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taatttcttgtcgcgctactatcttcaatgtttgaagctgcttgtgctatctagtcatgaagcctcgcgaaatgacatgattaagttttcttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAGTCAGCGTTAATATCGACACCAGTATCACAGAGTCGTATTCCGAAACTCT
species | Physcomitrella patens |
transcript | PP1S95_32V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAG TTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAGEST: gi|162267129|gb|FC443360.1|FC443360
genomic: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
EST: ATAGAAGTTTCTAAAGCAG TTGCAGCTGAGAAGCAGCAGGT-GCNAGAAGAAGTTGCAAATATGCTTGCA
genomic: ATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGC-AGAAGAAGTTGCAAATATGCTTGCA
gctatctagtcatgaagcctcgcgaaatgacatgattaagttttcttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAGTCAGCGTTAATATCGACACCAGTATCACAGAGTCGTATTCCGAAACTCT
tcttgac putative branch site (score: 23)
ttttctt CT-rich tract
attaagtttt TA-rich tract