1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagcatgtaggtttatatagcgttctgcgtacctggttgaggacacaggcaaacaggtaggatcagttcaaaattttgatatgtgtttttgtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATTTGGATTTGGTGCCGTTACTCTGTCCAATCTTCAAAAATATTTACAATGA
species | Physcomitrella patens |
transcript | PP1S95_32V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATTEST: gi|162161968|gb|FC338551.1|FC338551
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATTEST: gi|67700313|gb|BJ960546.1|BJ960546
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATTEST: gi|162186439|gb|FC362995.1|FC362995
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATTEST: gi|162203240|gb|FC379337.1|FC379337
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
caggcaaacaggtaggatcagttcaaaattttgatatgtgtttttgtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATTTGGATTTGGTGCCGTTACTCTGTCCAATCTTCAAAAATATTTACAATGA
ttttgat putative branch site (score: 24)
tttttgttt putative PPT
aaaattttgatatgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcatgtaggtttatatagcgttctgcgtacctggttgaggacacaggcaaacaggtaggatcagttcaaaattttgatatgtgtttttgtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATTTGGATTTGGTGCCGTTACTCTGTCCAATCTTCAAAAATATTTACAATGA
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