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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatttcttgtcgcgctactatcttcaatgtttgaagctgcttgtgctatctagtcatgaagcctcgcgaaatgacatgattaagttttcttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAGTCAGCGTTAATATCGACACCAGTATCACAGA

Basic information

species Physcomitrella patens
transcript PP1S95_32V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37823788|gb|BJ581854.1|BJ581854
EST:     AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAG                         TTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
genomic: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
EST: gi|37845810|gb|BJ603818.1|BJ603818
EST:     AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAG                         TTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
genomic: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
EST: gi|162250900|gb|FC425722.1|FC425722
EST:     AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAG                         TTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
genomic: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
EST: gi|162250899|gb|FC425721.1|FC425721
EST:     AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAG                         TTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
genomic: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
EST: gi|162217906|gb|FC393902.1|FC393902
EST:     AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAG                         TTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
genomic: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
EST: gi|37852253|gb|BJ610261.1|BJ610261
EST:     AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAG                         TTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG
genomic: AGTTTCAGGTGGCATTGATGAGCAGCTATCTATAGAAGTTTCTAAAGCAGgtcggttgta ... ttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatctagtcatgaagcctcgcgaaatgacatgattaagttttcttgacaacagTTGCAGCTGAGAAGCAGCAGGTGGCAGAAGAAGTTGCAAATATGCTTGCAGTCAGCGTTAATATCGACACCAGTATCACAGA
                                           tcttgac  putative branch site (score: 3)
                                        ttttctt  CT-rich tract
                                  attaagtttt  TA-rich tract