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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGTCGATATGGATCGGTGTATACTGCTGGCGGGTTCACAAACAGGACCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagtctttcctttgtatatactacagcatcaaatacgttattacatctaattcgaatttggctttgatggtgagccttctaaaatgtctgactg...

Basic information

species Physcomitrella patens
transcript PP1S95_32V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162203240|gb|FC379337.1|FC379337
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: gi|37823788|gb|BJ581854.1|BJ581854
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: gi|37845810|gb|BJ603818.1|BJ603818
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: gi|162250900|gb|FC425722.1|FC425722
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: gi|162250899|gb|FC425721.1|FC425721
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: gi|67700313|gb|BJ960546.1|BJ960546
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: gi|162217906|gb|FC393902.1|FC393902
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
EST: gi|37852253|gb|BJ610261.1|BJ610261
EST:     CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAG                         CACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT
genomic: CCTCTCTCTGCTTCTCGGATAGGCATGCCCTGTGTAGTAGTCCGCAGCAGgttcgttagt ... gtttgtacagCACAACAGCTCGGGCTGAGTTTCCAATGGCTAAAGCAGCACTCGAGGGATT