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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtctgccctcatcaacggggaatacgctcaaggaaaaccttatgatggtatgatgtcgaccctggttagatcgaatctaatgctcccttggtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCAATTGCGTGGACAGACCATCCTTCCGAAAGGGGGTTGTTGCTCTTAGGTC

Basic information

species Physcomitrella patens
transcript PP1S95_20V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37843982|gb|BJ601990.1|BJ601990
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|208352608|gb|DC918317.1|DC918317
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|208349735|gb|DC917913.1|DC917913
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|208393356|gb|DC904016.1|DC904016
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|37846790|gb|BJ604798.1|BJ604798
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|18333435|gb|BJ165450.1|BJ165450
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|18333444|gb|BJ165459.1|BJ165459
EST:     ACTAACGTGGAGCAGGCTTTTATGGCAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|208365886|gb|DC955461.1|DC955461
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|37845387|gb|BJ603395.1|BJ603395
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|37835693|gb|BJ593705.1|BJ593705
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
EST: gi|37851673|gb|BJ609681.1|BJ609681
EST:     ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAG                         GATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA
genomic: ACTAACGTGGAGCAGGCTTTTATGACAATGGCTGCCGAGATTAAAAATAGgtgagaatca ... gtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtatgatgtcgaccctggttagatcgaatctaatgctcccttggtttttgcagGATGGCAAGTCAACCTGCATTAAGCAGTACGAGCAGGCCAAACAATGTGCAATTGCGTGGACAGACCATCCTTCCGAAAGGGGGTTGTTGCTCTTAGGTC
                             atctaat  putative branch site (score: 3)
                                     ctcccttggttttt  CT-rich tract
                            aatctaat  TA-rich tract