1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtggatttttgcattactgttgaggaaaatttctgttaattgattcctgttacgtaggcttgtgtaacttgtgattaggttgaatttttaatgtcttggaatatgagtgtcttcgttgttttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGTTGAATGAAATCGATCGTTATGCAAGTGAGAACGTGAATAAGCTGCTTG
species | Physcomitrella patens |
transcript | PP1S95_20V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGEST: gi|18325475|gb|BJ157472.1|BJ157472
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAGTGTAAAGCAATGGEST: gi|208352608|gb|DC918317.1|DC918317
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGEST: gi|100448519|gb|CJ972818.1|CJ972818
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGEST: gi|208393356|gb|DC904016.1|DC904016
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGEST: gi|37846790|gb|BJ604798.1|BJ604798
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGEST: gi|208365886|gb|DC955461.1|DC955461
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: CCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTANCAATGTAAAGCAATGGEST: gi|37845387|gb|BJ603395.1|BJ603395
genomic: CCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGEST: gi|37851673|gb|BJ609681.1|BJ609681
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
EST: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATT ATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
genomic: GATTCAGGACAATCACGAGCAGCTATTACCGTGGTGCCCATGGGATAATTgtaagtggat ... tttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGG
ttaggttgaatttttaatgtcttggaatatgagtgtcttcgttgttttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGTTGAATGAAATCGATCGTTATGCAAGTGAGAACGTGAATAAGCTGCTTG
ttttaat putative branch site (score: 3)
tcttcgttgttttctt putative PPT
ttgaatttttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggatttttgcattactgttgaggaaaatttctgttaattgattcctgttacgtaggcttgtgtaacttgtgattaggttgaatttttaatgtcttggaatatgagtgtcttcgttgttttcttgcagATTGTGTACGATGTTACGGATCAGGAAAGTTTTAACAATGTAAAGCAATGGTTGAATGAAATCGATCGTTATGCAAGTGAGAACGTGAATAAGCTGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT