1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctaaacctgtgagttctaggaatctagttttaaaagtgtcaagtatgttgcttacttattgcaagttgtgcttttgtggatccttgaccttttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAACCTTCCTCAAATTGGCTGGGCAGTCAAGCCTGTCAGGACCTCCTCCAC
species | Physcomitrella patens |
transcript | PP1S95_19V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATC ATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAEST: gi|162227677|gb|FC402345.1|FC402345
genomic: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATCatatccttta ... tttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
EST: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATC ATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAEST: gi|162227676|gb|FC402344.1|FC402344
genomic: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATCatatccttta ... tttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
EST: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATC ATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAEST: gi|67699340|gb|BJ959573.1|BJ959573
genomic: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATCatatccttta ... tttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
EST: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATC ATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAEST: gi|6166785|gb|AW145049.1|AW145049
genomic: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATCatatccttta ... tttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
EST: GTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATC ATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAEST: gi|37830803|gb|BJ588815.1|BJ588815
genomic: GTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATCatatccttta ... tttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
EST: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATC ATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAEST: gi|37853680|gb|BJ611688.1|BJ611688
genomic: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATCatatccttta ... tttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
EST: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATC ATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
genomic: GTGTTGGTGGTTTAGTGCGCAGTGTTAATCTGGGAGAAGGACTGCCTATCatatccttta ... tttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGA
tgttgcttacttattgcaagttgtgcttttgtggatccttgaccttttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAACCTTCCTCAAATTGGCTGGGCAGTCAAGCCTGTCAGGACCTCCTCCAC
atccttgac putative branch site
ccttttgc CT-rich tract
ttacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaacctgtgagttctaggaatctagttttaaaagtgtcaagtatgttgcttacttattgcaagttgtgcttttgtggatccttgaccttttgcgacacATCAATCTACAGCGGAGTGTGGGCCTACCTGAGCTTCGTCGACTTCGTAGAACCTTCCTCAAATTGGCTGGGCAGTCAAGCCTGTCAGGACCTCCTCCAC
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