1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAAGCTATTGTTGAAGCTGTCAGCTTTCTTACTGGTAATAAAAATGTTGGGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttaccttgaatcctaaacctcgtttgtctttctagtttggcagttttttccaattttatttttattcttgatttgtattcaatttcaattttgcag
species | Physcomitrella patens |
transcript | PP1S95_19V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAGEST: gi|162227677|gb|FC402345.1|FC402345
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAGEST: gi|162227676|gb|FC402344.1|FC402344
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAGEST: gi|37830803|gb|BJ588815.1|BJ588815
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAGEST: gi|37853680|gb|BJ611688.1|BJ611688
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGCTATTGTTGAAGCTGTCAGCTTTCTTACTGGTAATAAAAATGTTGGGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttaccttgaatcctaaacctcgtttgtctttctagtttggcagttttttccaattttatttttattcttgatttgtattcaatttcaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC